{
  "_id": "6a27c29b24555f66ed53de05",
  "Package": "glmmFEL",
  "Type": "Package",
  "Title": "Generalized Linear Mixed Models via Fully Exponential Laplace in\nEM",
  "Version": "1.0.5",
  "Date": "2026-01-07",
  "Authors@R": "person(given = \"Andrew T.\",\nfamily = \"Karl\",\nemail = \"akarl@asu.edu\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-5933-8706\"))",
  "Description": "Fit generalized linear mixed models (GLMMs) with normal\nrandom effects using first-order Laplace, fully exponential\nLaplace (FEL) with mean-only corrections, and FEL with mean and\ncovariance corrections in the E-step of an\nexpectation-maximization (EM) algorithm. The current\ndevelopment version provides a matrix-based interface (y, X, Z)\nand supports binary logit and probit, and Poisson log-link\nmodels. An EM framework is used to update fixed effects, random\neffects, and a single variance component tau^2 for G = tau^2 I,\nwith staged approximations (Laplace -> FEL mean-only -> FEL\nfull) for efficiency and stability. A pseudo-likelihood engine\nglmmFEL_pl() implements the working-response / working-weights\nlinearization approach of Wolfinger and O'Connell (1993)\n<doi:10.1080/00949659308811554>, and is adapted from the\nimplementation used in the 'RealVAMS' package (Broatch, Green,\nand Karl (2018)) <doi:10.32614/RJ-2018-033>. The FEL\nimplementation follows Karl, Yang, and Lohr (2014)\n<doi:10.1016/j.csda.2013.11.019> and related work (e.g.,\nTierney, Kass, and Kadane (1989)\n<doi:10.1080/01621459.1989.10478824>; Rizopoulos, Verbeke, and\nLesaffre (2009) <doi:10.1111/j.1467-9868.2008.00704.x>; Steele\n(1996) <doi:10.2307/2532845>). Package code was drafted with\nassistance from generative AI tools.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Config/testthat/edition": "3",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-09 07:25:45 UTC",
    "User": "root"
  },
  "Author": "Andrew T. Karl [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-5933-8706>)",
  "Maintainer": "Andrew T. Karl <akarl@asu.edu>",
  "Repository": "https://akarl46556.r-universe.dev",
  "Date/Publication": "2026-01-09 14:50:02 UTC",
  "RemoteUrl": "https://github.com/cran/glmmFEL",
  "RemoteRef": "HEAD",
  "RemoteSha": "7a090329db43273387531f4c04747f41b480f2f6",
  "MD5sum": "30770ad7050a517623fd678255eec947",
  "_user": "akarl46556",
  "_type": "src",
  "_file": "glmmFEL_1.0.5.tar.gz",
  "_fileid": "6b054c39c296ea3fb47d96a5858e35f7f03a3a3aa8d6036dcf14b024aadee139",
  "_filesize": 210775,
  "_sha256": "6b054c39c296ea3fb47d96a5858e35f7f03a3a3aa8d6036dcf14b024aadee139",
  "_created": "2026-06-09T07:25:45.000Z",
  "_published": "2026-06-09T07:36:59.581Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80270004775,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7501158605"
    },
    {
      "job": 80270004769,
      "time": 156,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7501159978"
    },
    {
      "job": 80270004765,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7501330156"
    },
    {
      "job": 80270004729,
      "time": 95,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7501263067"
    },
    {
      "job": 80269607398,
      "time": 150,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7501105338"
    },
    {
      "job": 80270004731,
      "time": 121,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7501147350"
    },
    {
      "job": 80270004792,
      "time": 117,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7501146011"
    },
    {
      "job": 80270004756,
      "time": 107,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7501142371"
    },
    {
      "job": 80270004757,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7501142373"
    }
  ],
  "_buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/glmmFEL",
  "_commit": {
    "id": "7a090329db43273387531f4c04747f41b480f2f6",
    "author": "Andrew T. Karl <akarl@asu.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.5\n",
    "time": 1767970202
  },
  "_maintainer": {
    "name": "Andrew T. Karl",
    "email": "akarl@asu.edu",
    "login": "akarl46556",
    "description": "",
    "uuid": 37884655,
    "orcid": "0000-0002-5933-8706"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "nlme",
      "role": "Suggests"
    },
    {
      "package": "mvglmmRank",
      "role": "Suggests"
    },
    {
      "package": "lme4",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.0.5",
      "date": "2026-01-09"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "akarl46556",
      "count": 1,
      "uuid": 37884655
    }
  ],
  "_userbio": {
    "uuid": 37884655,
    "type": "user",
    "name": "akarl46556"
  },
  "_downloads": {
    "count": 106,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glmmFEL"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/glmmFEL.html",
    "manual.pdf"
  ],
  "_realowner": "akarl46556",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.5",
      "date": "2026-01-09"
    }
  ],
  "_exports": [
    "glmmFEL"
  ],
  "_help": [
    {
      "page": "glmmFEL-package",
      "title": "glmmFEL: Generalized Linear Mixed Models via Fully Exponential Laplace in EM",
      "topics": [
        "glmmFEL-package"
      ]
    },
    {
      "page": "coef.glmmFELMod",
      "title": "Extract model coefficients (fixed effects)",
      "topics": [
        "coef.glmmFELMod"
      ]
    },
    {
      "page": "fitted.glmmFELMod",
      "title": "Extract fitted values",
      "topics": [
        "fitted.glmmFELMod"
      ]
    },
    {
      "page": "glmmFEL",
      "title": "Fit GLMMs via Laplace and fully exponential Laplace (matrix interface)",
      "topics": [
        "glmmFEL"
      ]
    },
    {
      "page": "logLik.glmmFELMod",
      "title": "Extract log-likelihood (approximate)",
      "topics": [
        "logLik.glmmFELMod"
      ]
    },
    {
      "page": "predict.glmmFELMod",
      "title": "Predict from a fitted glmmFEL model",
      "topics": [
        "predict.glmmFELMod"
      ]
    },
    {
      "page": "print.glmmFELMod",
      "title": "Print a glmmFEL model object",
      "topics": [
        "print.glmmFELMod"
      ]
    },
    {
      "page": "print.summary.glmmFELMod",
      "title": "Print a summary.glmmFELMod object",
      "topics": [
        "print.summary.glmmFELMod"
      ]
    },
    {
      "page": "summary.glmmFELMod",
      "title": "Summary for a glmmFEL model object",
      "topics": [
        "summary.glmmFELMod"
      ]
    },
    {
      "page": "vcov.glmmFELMod",
      "title": "Extract the covariance matrix of the fixed effects",
      "topics": [
        "vcov.glmmFELMod"
      ]
    }
  ],
  "_rundeps": [
    "lattice",
    "Matrix",
    "numDeriv"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "glmmfel",
  "_universes": [
    "akarl46556"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.5",
      "date": "2026-06-09T07:27:52.000Z",
      "distro": "noble",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "69cf1b9d92e28f9ff041b86628530605996b0fc6db748abcdeb4175023525944",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.5",
      "date": "2026-06-09T07:27:54.000Z",
      "distro": "noble",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "10324c91a9620f6fa829cc14b3954349f3d3c67327c3cdb404393b92ea170606",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.5",
      "date": "2026-06-09T07:36:16.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "6c0016596199b291fc9c1f40930d604a611d69e057a477f00d9efa982d4602e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.5",
      "date": "2026-06-09T07:33:02.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "da4f86f2540a6d2f194a8279e5ffb237022286d3907e3a08898870bca714367d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.5",
      "date": "2026-06-09T07:28:01.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "11237e7019e844978e1106ff34cb51affa0ddb31d18c13b26534136f323e7d21",
      "status": "success",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-06-09T07:27:13.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "66e5198c691b26b3cca5f9cd1ed018e5efc3a5432a32ed4be64de0ef81fcf52b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-06-09T07:27:06.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "71acf205fc8df4b4a3e168f37b0aa68a864a1637a8908c5be66ead4e1d2e107e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-06-09T07:27:05.000Z",
      "commit": "7a090329db43273387531f4c04747f41b480f2f6",
      "fileid": "d58f47f4827ed216491ee90ce3c80bcc467c1ac8899ab6287c2b5c5d6173c302",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/akarl46556/actions/runs/27190578304"
    }
  ]
}